Introduction

The Rarefraction curve visualization is commonly used plot of the number of species against the number of samples, based on a box plot. This plot directly showed the coverage of species in the samples is effiency or not. Usually, the input contains two groups, users could estimates the sequencing coverage different between groups.

Input Files

Click on the Download Data button to check the demo input files.

1. Rarefaction Curve Data (TSV file)

• Demo input
  

Display Interactions

• Tooltips
  
  • Hover on the box and a info tooltip will display the: .
  • Hover on the outlier and a info tooltip will display its relative abundance and position on the x-axis.
• Draggable Legend
  Drag the lengend to adjust its position.
• Change X-axis Title
  Double click the x-axis title text on the left and customize your title.

Sidebar Functions

• Files

  • Manage Files: checklist of files uploaded previously, delete or download files.
  • Upload: upload files. Note that the duplicated file name will be alerted and given a random postfix.
  • Choose: choose files uploaded previously.

• Settings

  • Range Min: input a value to set the minimum value of the y-axis range.
  • Range Max: input a value to set the maximum value of the y-axis range.
  • Box width: input a value to set the box width.

Manual version=1.0, written by Dr. JIANG Yiqi and Ms. WANG Yanfei on 2022-04-19.